Recent publications from Edinburgh Infectious Diseases

A selection of recent publications from members of Edinburgh Infectious Diseases

In each of the past four years (2011-15), Edinburgh Infectious Diseases members have published more than 400 papers each year.

For this month's hot-off-the-press publications please see below

Wordle of the month - taken from the publication titles !

New notifications from PubMed - September 2017 

  1. Ballingall KT1, Lantier I2, Todd H3, Lantier F2, Rocchi M3. Structural and functional diversity arising from intra- and inter-haplotype combinations of duplicated DQA and B loci within the ovine MHC. Immunogenetics. 2017 Sep 9. doi: 10.1007/s00251-017-1029-z. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28889256
  2. Bartley K1, Turnbull F2, Wright HW2, Huntley JF2, Palarea-Albaladejo J3, Nath M3, Nisbet AJ2. Field evaluation of poultry red mite (Dermanyssus gallinae) native and recombinant prototype vaccines. Vet Parasitol. 2017 Sep 15;244:25-34. doi: 10.1016/j.vetpar.2017.06.020. Epub 2017 Jun 27. https://www.ncbi.nlm.nih.gov/pubmed/28917313
  3. Benson H1,2, Watterson S3, Sharman J1, Mpamhanga C4,5, Parton A3, Southan C1, Harmar A4, Ghazal P6,7. Is systems pharmacology ready to impact upon therapy development? A study on the cholesterol biosynthesis pathway. Br J Pharmacol. 2017 Sep 14. doi: 10.1111/bph.14037. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28910500
  4. Boyle A1, Hogan K1, Manson JC1, Diack AB2. Strain Typing of Prion Diseases Using In Vivo Mouse Models. Methods Mol Biol. 2017;1658:263-283. doi: 10.1007/978-1-4939-7244-9_18. https://www.ncbi.nlm.nih.gov/pubmed/28861795
  5. Brennan GL1,2, Colegrave N1, Collins S3. Evolutionary consequences of multidriver environmental change in an aquatic primary producer. Proc Natl Acad Sci U S A. 2017 Aug 28. pii: 201703375. doi: 10.1073/pnas.1703375114. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28847969
  6. Cartlidge MK1, Hill AT1. Inhaled or nebulised ciprofloxacin for the maintenance treatment of bronchiectasis. Expert Opin Investig Drugs. 2017 Sep;26(9):1091-1097. doi: 10.1080/13543784.2017.1364728. Epub 2017 Aug 16. https://www.ncbi.nlm.nih.gov/pubmed/28778139
  7. Cherif MK1,2, Ouédraogo O1,3, Sanou GS1, Diarra A1, Ouédraogo A1, Tiono A1, Cavanagh DR4 et al. Antibody responses to P. falciparum blood stage antigens and incidence of clinical malaria in children living in endemic area in Burkina Faso. BMC Res Notes. 2017 Sep 8;10(1):472. doi: 10.1186/s13104-017-2772-9. https://www.ncbi.nlm.nih.gov/pubmed/28886727
  8. Clark EL1, Bush SJ1, McCulloch MEB1, Farquhar IL1, Young R1, Lefevre L1, Pridans C1, et al. A high resolution atlas of gene expression in the domestic sheep (Ovis aries). PLoS Genet. 2017 Sep 15;13(9):e1006997. doi: 10.1371/journal.pgen.1006997. [Epub ahead of print]https://www.ncbi.nlm.nih.gov/pubmed/28915238
  9. Dall GF1, Tsang STJ2, Gwynne PJ3, Wilkinson AJ3, Simpson AHRW4, Breusch SJB5, Gallagher MP3. The dissolvable bead: A novel in vitro biofilm model for evaluating antimicrobial resistance. J Microbiol Methods. 2017 Sep 1. pii: S0167-7012(17)30227-0. doi: 10.1016/j.mimet.2017.08.020. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28870772
  10. Faluyi OO1,2, Fitch P2, Howie SEM2. An increased CD25-positive intestinal regulatory T-lymphocyte population is dependent on Cox-2 activity in the Apc Min/+ model. Clin Exp Immunol. 2017 Sep 23. doi: 10.1111/cei.13055. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28940183
  11. Fast C1, Goldmann W2, Berthon P3, Tauscher K1, Andréoletti O4, Lantier I3, Rossignol C3, et al. Protecting effect of PrP codons M142 and K222 in goats orally challenged with bovine spongiform encephalopathy prions. Vet Res. 2017 Sep 19;48(1):52. doi: 10.1186/s13567-017-0455-0. https://www.ncbi.nlm.nih.gov/pubmed/28927447
  12. Froy H1, Bird EJ2, Wilbourn RV2, Fairlie J2, Underwood SL2, Salvo-Chirnside E3, Pilkington JG2 et al. No evidence for parental age effects on offspring leukocyte telomere length in free-living Soay sheep. Sci Rep. 2017 Aug 30;7(1):9991. doi: 10.1038/s41598-017-09861-3. https://www.ncbi.nlm.nih.gov/pubmed/28855677
  13. Gray RD1, Hardisty G1, Regan KH1, Smith M1, Robb CT1, Duffin R1, Mackellar A1, Felton JM1 et al. Delayed neutrophil apoptosis enhances NET formation in cystic fibrosis. Thorax. 2017 Sep 15. pii: thoraxjnl-2017-210134. doi: 10.1136/thoraxjnl-2017-210134. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28916704
  14. Henry MK1, Tongue SC1, Evans J1, Webster C1, McKENDRICK IJ2, Morgan M3, Willett A3, et al. British Escherichia coli O157 in Cattle Study (BECS): to determine the prevalence of E. coli O157 in herds with cattle destined for the food chain. Epidemiol Infect. 2017 Sep 19:1-12. doi: 10.1017/S0950268817002151. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28925340
  15. Horne AW1, Vincent K2, Cregg R3, Daniels J4. Is gabapentin effective for women with unexplained chronic pelvic pain? BMJ. 2017 Sep 21;358:j3520. doi: 10.1136/bmj.j3520. https://www.ncbi.nlm.nih.gov/pubmed/28935652
  16. Kamidi CM1,2,3, Saarman NP4, Dion K4, Mireji PO1,3,5, Ouma C2, Murilla G1, Aksoy S3, Schnaufer A6, Caccone A3,4. Multiple evolutionary origins of Trypanosoma evansi in Kenya. PLoS Negl Trop Dis. 2017 Sep 7;11(9):e0005895. doi: 10.1371/journal.pntd.0005895. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28880965
  17. Kast JI1,2, McFarlane AJ3, Głobińska A1,2,4, Sokolowska M1,2, Wawrzyniak P1,2, Sanak M5 et al. Respiratory syncytial virus infection influences tight junction integrity. Clin Exp Immunol. 2017 Aug 30. doi: 10.1111/cei.13042. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28856667
  18. Keser T1, Gornik I2, Vučković F3, Selak N1, Pavić T1, Lukić E2, Gudelj I3, Gašparović H4, et al. Increased plasma N-glycome complexity is associated with higher risk of type 2 diabetes. Diabetologia. 2017 Sep 13. doi: 10.1007/s00125-017-4426-9. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28905229
  19. Kontaxi C1, Piccardo P1, Gill AC1. Lysine-Directed Post-translational Modifications of Tau Protein in Alzheimer's Disease and Related Tauopathies. Front Mol Biosci. 2017 Aug 11;4:56. doi: 10.3389/fmolb.2017.00056. eCollection 2017. https://www.ncbi.nlm.nih.gov/pubmed/28848737
  20. Kraemer S1, Böndel KB1, Ness RW2, Keightley PD1, Colegrave N1. Fitness change in relation to mutation number in spontaneous mutation accumulation lines of Chlamydomonas reinhardtii. Evolution. 2017 Sep 8. doi: 10.1111/evo.13360. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28884790
  21. Laetsch DR1, Blaxter ML2. KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences. G3 (Bethesda). 2017 Sep 2. pii: g3.300233.2017. doi: 10.1534/g3.117.300233. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28866640
  22. Luo SX1, Fan JH1, Opriessnig T2, Di JM1, Liu BJ1, Zuo YZ3. Development and application of a recombinant M protein-based indirect ELISA for the detection of porcine deltacoronavirus IgG antibodies. J Virol Methods. 2017 Aug 30;249:76-78. doi: 10.1016/j.jviromet.2017.08.020. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28860101
  23. Macdonald SE1, Nolan MJ1, Harman K1, Boulton K2, Hume DA2, Tomley FM1, Stabler RA3, Blake DP1. Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology. PLoS One. 2017 Sep 21;12(9):e0184890. doi: 10.1371/journal.pone.0184890. eCollection 2017. https://www.ncbi.nlm.nih.gov/pubmed/28934262
  24. Mohamad F1, Tanner MG2, Choudhury D2, Choudhary TR3, Wood HAC4, Harrington K4, Bradley M1. Controlled core-to-core photo-polymerisation - fabrication of an optical fibre-based pH sensor. Analyst. 2017 Aug 30. doi: 10.1039/c7an00454k. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28853485
  25. Muangsombut V1, Withatanung P1, Srinon V1,2, Chantratita N3, Stevens MP4, et al. Burkholderia pseudomallei Evades Nramp1 (Slc11a1)- and NADPH Oxidase-Mediated Killing in Macrophages and Exhibits Nramp1-Dependent Virulence Gene Expression. Front Cell Infect Microbiol. 2017 Aug 8;7:350. doi: 10.3389/fcimb.2017.00350. eCollection 2017. https://www.ncbi.nlm.nih.gov/pubmed/28848712
  26. Noguchi S1, Arakawa T1,2, Fukuda S2, Furuno M1,2, Hasegawa A1,2, Hori F1,2, et al. FANTOM5 CAGE profiles of human and mouse samples. Sci Data. 2017 Aug 29;4:170112. doi: 10.1038/sdata.2017.112. https://www.ncbi.nlm.nih.gov/pubmed/28850106
  27. Olukosi OA1, Kasprzak MM2, Kightley S3, Carre P4, Wiseman J2, Houdijk JGM1. Investigations of the nutritive value of meals of double-low rapeseed and its influence on growth performance of broiler chickens. Poult Sci. 2017 Sep 1;96(9):3338-3350. doi: 10.3382/ps/pex157. https://www.ncbi.nlm.nih.gov/pubmed/28854758
  28. Opriessnig T1, Gerber PF2, Matzinger SR3, Meng XJ3, Halbur PG4. Markedly different immune responses and virus kinetics in littermates infected with porcine circovirus type 2 or porcine parvovirus type 1. Vet Immunol Immunopathol. 2017 Sep;191:51-59. doi: 10.1016/j.vetimm.2017.08.003. Epub 2017 Aug 9. https://www.ncbi.nlm.nih.gov/pubmed/28895867
  29. Polverino E1, Goeminne PC2,3, McDonnell MJ4,5,6, Aliberti S7, Marshall SE8, Loebinger MR9 et al. European Respiratory Society guidelines for the management of adult bronchiectasis. Eur Respir J. 2017 Sep 9;50(3). pii: 1700629. doi: 10.1183/13993003.00629-2017. Print 2017 Sep. https://www.ncbi.nlm.nih.gov/pubmed/28889110
  30. Reece SE1,2, Prior KF1, Mideo N3. The Life and Times of Parasites: Rhythms in Strategies for Within-host Survival and Between-host Transmission. J Biol Rhythms. 2017 Aug 1:748730417718904. doi: 10.1177/0748730417718904. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28845736
  31. Rosko J1, Martinez VA2, Poon WCK2, Pilizota T3. Osmotaxis in Escherichia coli through changes in motor speed. Proc Natl Acad Sci U S A. 2017 Sep 5. pii: 201620945. doi: 10.1073/pnas.1620945114. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28874571
  32. Scheltema NM1, Gentile A2, Lucion F2, Nokes DJ3, Munywoki PK4, Madhi SA5, Groome MJ5 et al. Global respiratory syncytial virus-associated mortality in young children (RSV GOLD): a retrospective case series. Lancet Glob Health. 2017 Oct;5(10):e984-e991. doi: 10.1016/S2214-109X(17)30344-3. https://www.ncbi.nlm.nih.gov/pubmed/28911764
  33. Silvester E1, Young J1, Ivens A1, Matthews KR2. Interspecies quorum sensing in co-infections can manipulate trypanosome transmission potential. Nat Microbiol. 2017 Sep 4. doi: 10.1038/s41564-017-0014-5. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28871083
  34. Tuffs SW1, James DBA2, Bestebroer J3, Richards AC1, Goncheva MI1, O'Shea M1, Wee BA1et al. The Staphylococcus aureus superantigen SElX is a bifunctional toxin that inhibits neutrophil function. PLoS Pathog. 2017 Sep 7;13(9):e1006461. doi: 10.1371/journal.ppat.1006461. eCollection 2017 Sep. https://www.ncbi.nlm.nih.gov/pubmed/28880920
  35. Wheeler E1, Leong A2,3, Liu CT4, Hivert MF5,6, Strawbridge RJ7,8, Podmore C9,10, Li M11,12,13. Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis. PLoS Med. 2017 Sep 12;14(9):e1002383. doi: 10.1371/journal.pmed.1002383. eCollection 2017 Sep. https://www.ncbi.nlm.nih.gov/pubmed/28898252
  36. Willocks LJ1, Guerendiain D2, Austin HI1, Morrison KE1, Cameron RL3, Templeton KE2, DE Lima VRF4 et al. An outbreak of mumps with genetic strain variation in a highly vaccinated student population in Scotland. Epidemiol Infect. 2017 Sep 14:1-7. doi: 10.1017/S0950268817002102. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28903791
  37. Winters J1, Sridhar D2. Earmarking for global health: benefits and perils of the World Bank's trust fund model. BMJ. 2017 Aug 31;358:j3394. doi: 10.1136/bmj.j3394. https://www.ncbi.nlm.nih.gov/pubmed/28860310
  38. Young VJ1, Ahmad SF1, Duncan WC, Horne AW1. The role of TGF-β in the pathophysiology of peritoneal endometriosis. Hum Reprod Update. 2017 Sep 1;23(5):548-559. doi: 10.1093/humupd/dmx016. https://www.ncbi.nlm.nih.gov/pubmed/28903471
  39. Yuan M1, Vásquez-Valdivieso MG1, McNae I1, Michels PAM1, Fothergill-Gilmore LA1, Walkinshaw MD2. Structures of Leishmania Fructose-1,6-bisphosphatase Reveal Species-Specific Differences in the Mechanism of Allosteric Inhibition. J Mol Biol. 2017 Sep 4. pii: S0022-2836(17)30416-3. doi: 10.1016/j.jmb.2017.08.010. [Epub ahead of print] https://www.ncbi.nlm.nih.gov/pubmed/28882541

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